BMRB Entry 10065

Title:
Solution structure of the SAND domain of the putative nuclear protein homolog (5830484A20Rik)
Deposition date:
2006-12-25
Original release date:
2008-08-14
Authors:
Tochio, N.; Kobayashi, N.; Koshiba, S.; Kigawa, T.; Inoue, M.; Shirouzu, M.; Terada, T.; Yabuki, T.; Aoki, M.; Seki, E.; Matsuda, T.; Hirota, H.; Yoshida, M.; Tanaka, A.; Osanai, T.; Matsuo, Y.; Arakawa, T.; Carninci, P.; Kawai, J.; Hayashizaki, Y.; Yokoyama, S.
Citation:

Citation: Tochio, N.; Kobayashi, N.; Koshiba, S.; Kigawa, T.; Inoue, M.; Shirouzu, M.; Terada, T.; Yabuki, T.; Aoki, M.; Seki, E.; Matsuda, T.; Hirota, H.; Yoshida, M.; Tanaka, A.; Osanai, T.; Matsuo, Y.; Arakawa, T.; Carninci, P.; Kawai, J.; Hayashizaki, Y.; Yokoyama, S.. "Solution structure of the SAND domain of the putative nuclear protein homolog (5830484A20Rik)"  .

Assembly members:

Assembly members:
SAND DOMAIN, polymer, 94 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: mouse   Taxonomy ID: 10090   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Mus musculus

Experimental source:

Experimental source:   Production method: cell free synthesis   Vector: P021030-59

Entity Sequences (FASTA):

Data sets:
Data typeCount
13C chemical shifts390
15N chemical shifts98
1H chemical shifts604

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1putative nuclear protein homolog 5830484A20Rik1

Entities:

Entity 1, putative nuclear protein homolog 5830484A20Rik 94 residues - Formula weight is not available

1   GLYSERSERGLYSERSERGLYASNASPALA
2   VALASPPHESERPROTHRLEUPROVALTHR
3   CYSGLYLYSALALYSGLYTHRLEUPHEGLN
4   GLULYSLEULYSGLNGLYALASERLYSLYS
5   CYSILEGLNASNGLUALAGLYASPTRPLEU
6   THRVALLYSGLUPHELEUASNGLUGLYGLY
7   ARGALATHRSERLYSASPTRPLYSGLYVAL
8   ILEARGCYSASNGLYGLUTHRLEUARGHIS
9   LEUGLUGLNLYSGLYLEULEUPHESERGLY
10   PROSERSERGLY

Samples:

sample_1: SAND domain, [U-13C; U-15N], 1.3 mM; phosphate 20 mM; NaCl 100 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 6.0; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
3D 13C-separated NOESYsample_1not availablecondition_1
3D 15N-separated NOESYsample_1not availablecondition_1

Software:

xwinnmr v2.6, Bruker - collection

NMRPipe v20020425, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.816, Kobayashi, N. - data analysis

CYANA v2.0.14, Guntert, P. - refinement, structure solution

NMR spectrometers:

  • Bruker AVANCE 800 MHz

Related Database Links:

PDB
DBJ BAC37018 BAE29505
GB AAH94500 AAW32543
REF NP_084470 NP_780606 XP_006529132 XP_011246199 XP_011246200
SP Q8BVK9
AlphaFold Q8BVK9

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks